spacer
spacer

PDBsum entry 3mpb

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3mpb calculated with MOLE 2.0 PDB id
3mpb
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.14 1.23 31.6 -0.79 -0.24 20.0 85 5 3 1 6 0 1 0  
2 1.16 1.37 36.8 -0.38 -0.07 18.1 79 6 3 0 7 1 1 0  
3 2.08 2.30 89.2 -2.40 -0.22 28.9 77 8 3 2 2 2 2 2  GOL 230 A
4 1.25 1.26 96.8 -0.46 -0.05 18.2 79 9 5 2 12 2 4 3  GOL 230 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer