PDBsum entry 3ml4 Go to PDB code:  Tunnel analysis for: 3ml4 calculated with MOLE 2.0 PDB id 3ml4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 1.38 33.1 -1.48 -0.38 16.8 72 4 2 1 2 3 3 0   2 1.37 1.38 41.6 -1.73 -0.47 18.6 71 5 3 1 1 3 3 0   3 1.54 1.54 42.4 -1.03 -0.27 13.8 74 5 3 0 4 2 3 0   4 1.37 1.38 43.0 -1.57 -0.38 18.2 74 5 4 1 3 3 3 0   5 1.54 1.54 43.2 -0.93 -0.24 11.4 72 5 2 0 2 2 3 0   6 1.28 1.27 46.1 -1.90 -0.35 18.3 82 6 4 3 1 3 1 0   7 1.42 1.50 49.6 -1.66 -0.21 18.2 80 7 3 2 1 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.