 |
PDBsum entry 3mgo
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 3mgo calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3mgo
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
11 pores,
coloured by radius |
|
11 pores,
coloured by radius
|
11 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.44 |
2.62 |
25.8 |
-2.24 |
-0.80 |
24.5 |
81 |
|
3 |
2 |
1 |
0 |
0 |
1 |
0 |
|
|
 |
|
2 |
 |
2.90 |
2.90 |
30.2 |
-1.55 |
-0.66 |
19.9 |
84 |
5 |
3 |
1 |
1 |
0 |
0 |
0 |
|
|
3 |
 |
2.32 |
3.27 |
35.6 |
-1.48 |
-0.42 |
16.4 |
82 |
2 |
4 |
4 |
1 |
4 |
2 |
0 |
|
|
4 |
 |
1.50 |
1.71 |
61.9 |
-2.07 |
-0.59 |
23.4 |
80 |
7 |
8 |
4 |
1 |
4 |
2 |
0 |
|
|
5 |
 |
2.27 |
2.59 |
62.6 |
-1.91 |
-0.37 |
20.3 |
74 |
7 |
6 |
3 |
2 |
5 |
3 |
0 |
|
|
6 |
 |
2.27 |
2.82 |
72.9 |
-1.62 |
-0.44 |
17.2 |
78 |
8 |
6 |
4 |
1 |
6 |
1 |
0 |
|
|
7 |
 |
1.73 |
1.80 |
75.1 |
-2.32 |
-0.68 |
26.2 |
83 |
10 |
7 |
4 |
0 |
2 |
0 |
0 |
|
|
8 |
 |
1.74 |
1.80 |
80.3 |
-2.02 |
-0.44 |
21.4 |
77 |
7 |
7 |
5 |
1 |
6 |
1 |
0 |
|
|
9 |
 |
2.36 |
3.44 |
134.1 |
-1.75 |
-0.65 |
19.6 |
81 |
8 |
13 |
5 |
1 |
6 |
1 |
0 |
|
|
10 |
 |
1.99 |
2.00 |
144.5 |
-2.14 |
-0.58 |
22.2 |
79 |
14 |
11 |
9 |
1 |
8 |
2 |
0 |
|
 |
11 |
 |
2.31 |
3.04 |
183.9 |
-2.05 |
-0.57 |
24.6 |
79 |
9 |
21 |
5 |
3 |
8 |
2 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program