PDBsum entry 3m4h

Tunnel analysis for: 3m4h calculated with

MOLE 2.0

PDB id

3m4h

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.74

1.74

18.9

-1.88

-0.29

21.8

76

3

2

2

1

3

1

0

NAP 500 A

2

1.69

1.68

19.5

-0.61

0.95

8.7

52

1

1

0

1

7

1

1

NAP 500 A 388 600 A

3

1.37

1.37

19.5

0.57

1.28

2.4

49

1

0

0

2

6

1

1

388 600 A BR 800 A

4

1.76

1.75

22.9

-0.67

-0.01

13.9

73

3

2

2

4

3

2

0

NAP 500 A

5

1.37

1.37

39.5

-0.78

0.47

12.6

66

5

1

2

3

7

1

2

NAP 500 A 388 600 A BR 800 A

6

1.42

2.23

18.0

-1.19

-0.09

14.7

73

2

1

3

3

3

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.