PDBsum entry 3m1b

Pore analysis for: 3m1b calculated with

MOLE 2.0

PDB id

3m1b

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.53

2.60

25.4

-2.26

-0.67

18.6

79

3

3

2

1

0

3

0

2

1.29

2.55

25.4

1.20

0.53

3.9

71

1

1

1

6

2

1

0

3

2.18

3.45

28.0

-2.72

-0.70

31.0

80

3

4

2

0

0

2

0

4

1.30

2.46

47.3

-1.14

-0.21

18.9

74

5

3

2

6

2

1

0

5

1.87

2.30

62.1

-1.16

-0.18

15.8

77

2

4

6

4

3

4

1

6

2.10

2.30

63.3

-1.24

-0.15

16.5

76

3

5

6

2

5

3

1

7

2.11

2.30

71.2

-1.64

-0.33

19.4

74

4

6

4

1

3

4

1

8

2.02

2.16

38.5

-0.70

-0.04

7.2

72

2

1

5

0

5

3

1

9

1.19

3.27

49.4

0.64

0.50

11.2

61

4

1

1

11

6

0

1

10

2.05

3.08

51.0

-0.73

-0.10

10.6

65

2

2

2

4

4

4

0

11

2.04

3.54

67.3

-1.18

-0.38

13.9

77

2

4

6

3

5

4

1

12

1.20

2.73

29.8

0.98

0.51

10.4

64

3

1

1

7

5

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.