spacer
spacer

PDBsum entry 3m0f

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3m0f calculated with MOLE 2.0 PDB id
3m0f
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.90 2.14 33.1 -0.98 0.39 9.0 72 2 3 4 4 6 0 0  
2 1.35 1.73 33.7 -0.88 0.44 9.1 70 3 3 3 3 5 1 0  
3 1.37 1.74 37.7 -0.67 0.51 9.7 68 3 3 3 4 8 1 0  GSH 220 A
4 1.88 3.58 40.2 -0.85 0.05 16.3 79 2 4 5 6 7 0 0  GSH 220 A
5 1.70 3.09 61.5 -0.57 0.34 9.4 79 2 3 6 6 6 0 0  GSH 220 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer