PDBsum entry 3l8h Go to PDB code:  Tunnel analysis for: 3l8h calculated with MOLE 2.0 PDB id 3l8h Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.46 1.58 25.2 -0.08 0.13 14.2 79 3 2 0 6 1 1 0  MSE 72 A 2 1.48 1.59 33.0 -1.00 -0.08 18.2 80 7 2 2 4 1 1 1  MSE 72 A MSE 88 A 3 1.53 1.52 16.1 -1.90 -0.79 15.4 81 1 1 2 1 0 1 0   4 1.59 2.06 15.2 -0.75 -0.06 12.2 84 2 1 4 0 2 0 0  PO4 2001 A FMT 2007 A 5 1.14 1.22 19.2 -0.73 -0.09 14.2 84 3 1 4 3 2 0 0  PO4 2001 A FMT 2007 A 6 1.15 1.28 19.1 -0.73 -0.11 18.4 81 2 3 2 3 2 0 0  SAR 2008 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.