PDBsum entry 3l6c Go to PDB code:  Tunnel analysis for: 3l6c calculated with MOLE 2.0 PDB id 3l6c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.60 1.82 23.7 -1.26 -0.58 14.0 85 3 1 3 3 1 2 0  MLI 341 A PLP 350 A 2 1.22 2.67 27.5 -1.48 -0.46 20.0 80 4 2 2 3 1 2 0  MLI 341 A PLP 350 A 3 1.61 1.82 28.1 -1.24 -0.50 15.3 89 3 2 5 4 1 2 0  MLI 341 A PLP 350 A 4 1.22 2.66 32.0 -1.50 -0.42 21.0 86 4 3 4 4 1 2 0  MLI 341 A PLP 350 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.