 |
PDBsum entry 3koa
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 3koa calculated with MOLE 2.0
|
PDB id
|
|
|
|
3koa
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
2 pores,
coloured by radius |
 |
2 pores,
coloured by radius
|
2 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.04 |
2.31 |
42.3 |
-2.63 |
-0.64 |
33.1 |
83 |
 |
8 |
4 |
0 |
0 |
0 |
0 |
0 |
 |
DPO 665 A A 903 B U 904 B G 905 B G 907 B C 908 B DC 918 C DC 919 C DC 920 C DG 921 C
|
 |
 |
2 |
 |
1.58 |
2.74 |
43.1 |
-0.45 |
-0.26 |
13.7 |
79 |
3 |
2 |
1 |
5 |
1 |
1 |
0 |
A 903 B G 905 B G 907 B C 908 B DC 918 C DC 919 C
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |