PDBsum entry 3knh Go to PDB code:  Tunnel analysis for: 3knh calculated with MOLE 2.0 PDB id 3knh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.48 35.7 1.58 0.36 6.0 79 1 2 2 8 2 0 0   2 1.47 1.81 39.4 1.72 0.64 9.6 74 4 1 1 9 3 0 0   3 1.41 1.50 40.9 1.53 0.55 7.9 74 3 1 2 9 3 1 0   4 1.56 1.60 16.9 0.28 0.29 13.9 88 1 1 1 3 1 0 0  A 684 A 5 1.21 2.22 24.3 2.59 0.73 0.9 89 0 0 1 10 0 0 0   6 1.15 1.81 26.2 2.15 0.47 1.2 90 0 0 1 10 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.