PDBsum entry 3khc Go to PDB code:  Tunnel analysis for: 3khc calculated with MOLE 2.0 PDB id 3khc Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 1.53 32.6 -0.51 0.23 14.8 78 6 2 4 6 5 0 0  CO 217 B AKG 401 B DA 3 C MG1 4 C 2 1.38 2.26 32.6 -0.50 0.23 14.0 81 5 2 4 7 4 0 0  CO 217 B AKG 401 B DT 2 C MG1 4 C 3 1.27 1.44 32.2 0.13 0.21 10.9 84 5 1 4 7 3 0 0  CO 217 A AKG 400 A 4 1.22 1.37 32.5 0.13 0.20 11.1 84 5 1 4 7 3 0 0  CO 217 A AKG 400 A 5 1.26 1.44 32.8 -0.13 0.34 12.2 81 5 1 3 7 4 1 0  CO 217 A AKG 400 A 6 1.22 1.37 33.1 -0.12 0.33 12.3 81 5 1 3 7 4 1 0  CO 217 A AKG 400 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.