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PDBsum entry 3kd6
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Tunnel analysis for: 3kd6 calculated with  MOLE 2.0
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PDB id
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3kd6
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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0 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.71 |
2.31 |
15.3 |
0.10 |
0.31 |
3.5 |
79 |
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0 |
1 |
3 |
1 |
4 |
0 |
0 |
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MSE 149 A AMP 509 A
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2 |
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1.37 |
2.00 |
17.2 |
0.85 |
0.55 |
8.6 |
69 |
1 |
2 |
1 |
3 |
3 |
0 |
0 |
AMP 509 A
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3 |
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1.04 |
2.29 |
20.0 |
-1.66 |
-0.52 |
13.1 |
94 |
2 |
0 |
4 |
3 |
1 |
0 |
0 |
GOL 501 A
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4 |
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1.30 |
1.49 |
20.5 |
-2.21 |
-0.69 |
20.1 |
95 |
1 |
3 |
3 |
2 |
0 |
0 |
0 |
GOL 501 A AMP 509 A
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5 |
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1.29 |
1.48 |
23.6 |
-1.91 |
-0.71 |
16.4 |
96 |
1 |
4 |
3 |
3 |
0 |
0 |
0 |
GOL 501 A AMP 509 A
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6 |
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1.70 |
2.00 |
25.8 |
-1.39 |
-0.12 |
7.6 |
86 |
1 |
2 |
6 |
1 |
4 |
0 |
0 |
MSE 149 A AMP 509 A
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7 |
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1.31 |
1.50 |
28.5 |
-1.11 |
-0.46 |
13.7 |
90 |
1 |
4 |
2 |
4 |
0 |
1 |
0 |
MSE 91 A GOL 501 A AMP 509 A
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8 |
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1.48 |
1.70 |
34.7 |
-1.15 |
-0.28 |
11.0 |
86 |
1 |
2 |
4 |
2 |
2 |
1 |
0 |
MSE 91 A AMP 509 A
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9 |
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1.31 |
1.50 |
38.2 |
-0.58 |
0.05 |
12.8 |
76 |
2 |
5 |
2 |
5 |
5 |
0 |
0 |
MSE 149 A GOL 501 A AMP 509 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program