PDBsum entry 3k9c Go to PDB code:  Tunnel analysis for: 3k9c calculated with MOLE 2.0 PDB id 3k9c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 1.46 21.9 0.75 -0.02 8.1 92 1 1 1 6 0 0 0  MSE 292 B 2 1.38 1.46 23.0 0.74 0.02 8.9 92 1 1 1 6 0 0 0  MSE 292 B 3 1.41 2.41 24.4 -1.08 -0.77 7.5 78 2 1 2 0 1 0 0   4 1.39 1.45 37.3 -0.68 -0.26 16.3 82 5 3 2 6 1 1 0   5 1.28 1.53 38.9 -0.18 -0.06 15.3 85 5 2 1 8 0 1 0  MSE 292 B 6 1.25 1.54 40.0 -0.02 0.00 14.7 85 5 2 1 8 0 1 0  MSE 292 B 7 1.08 1.83 15.4 2.34 0.49 2.9 75 1 0 0 7 0 0 1  MSE 122 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.