PDBsum entry 3k4l

Tunnel analysis for: 3k4l calculated with

MOLE 2.0

PDB id

3k4l

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.32

2.54

32.9

-0.64

0.01

8.5

80

3

1

4

6

2

1

0

FAD 801 B SHG 901 B

2

1.25

1.73

35.7

0.09

-0.10

10.2

89

3

2

2

6

1

1

0

FAD 801 B

3

2.01

2.01

37.0

-0.26

-0.06

8.0

76

2

1

3

6

2

1

1

FAD 801 A SHG 901 A

4

1.40

1.40

37.3

-0.20

0.01

7.9

80

2

1

3

7

1

1

1

FAD 801 A SHG 901 A

5

1.78

1.81

37.3

-0.31

-0.04

8.0

81

3

1

3

7

1

1

1

FAD 801 B SHG 901 B

6

1.35

1.35

19.1

-0.84

-0.38

7.8

68

1

1

2

1

2

4

0

7

1.33

1.33

21.7

-1.33

-0.40

13.1

69

1

2

2

1

2

4

0

8

1.20

1.20

18.9

-0.87

-0.33

7.8

69

1

0

2

1

2

3

0

9

1.14

1.54

16.5

-0.27

-0.14

5.8

77

0

1

0

4

1

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.