PDBsum entry 3jz3 Go to PDB code:  Tunnel analysis for: 3jz3 calculated with MOLE 2.0 PDB id 3jz3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.19 25.4 -1.43 -0.62 16.2 85 2 4 5 3 0 1 0   2 1.16 1.75 26.1 -0.77 -0.47 9.6 84 1 3 5 4 0 2 0   3 1.11 3.08 33.0 -0.16 0.02 15.3 85 2 2 4 8 0 1 0   4 1.22 1.34 19.7 1.09 0.67 10.9 64 2 1 0 5 2 0 0  MSE 431 A 5 1.21 1.34 21.6 1.22 0.70 10.3 63 2 1 0 6 2 0 0  MSE 431 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.