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PDBsum entry 3jsx

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3jsx calculated with MOLE 2.0 PDB id
3jsx
Pores calculated on whole structure Pores calculated excluding ligands

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19 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.79 3.87 30.5 -1.93 -0.48 25.3 75 4 3 2 5 1 0 0  
2 1.27 1.33 34.7 -1.24 -0.16 12.2 82 4 1 7 2 4 2 0  FAD 601 G
3 1.27 1.35 45.6 -1.68 -0.26 10.9 85 4 1 8 2 3 2 0  FAD 601 G
4 1.22 1.33 57.7 -1.29 -0.18 13.0 82 5 1 8 2 5 2 0  CC2 547 E FAD 601 E
5 1.24 1.34 59.2 -1.26 -0.18 10.1 81 4 1 7 4 5 2 0  CC2 547 E FAD 601 E
6 1.34 1.34 78.6 -1.52 -0.19 15.3 83 10 4 9 7 6 3 0  FAD 601 B
7 1.17 2.39 101.9 -0.33 -0.10 11.8 88 5 4 13 12 4 2 0  FAD 601 E
8 1.32 1.49 109.6 -0.83 -0.08 9.8 81 9 3 10 10 10 4 0  FAD 601 B CC2 547 D FAD 601 D
9 1.21 1.23 113.9 -1.17 -0.20 14.4 82 10 5 9 10 5 3 0  FAD 601 A
10 1.26 2.60 119.2 -0.57 -0.19 13.1 87 8 5 14 13 3 2 0  FAD 601 C CC2 547 E FAD 601 E
11 1.24 1.49 121.3 -1.11 -0.09 10.9 84 11 3 14 12 8 5 0  CC2 547 D FAD 601 D
12 1.24 1.22 144.9 -1.28 -0.27 16.8 80 14 9 11 15 5 3 0  FAD 601 A
13 1.19 1.34 195.1 -1.14 -0.21 11.8 84 12 5 18 13 10 4 0  CC2 547 F FAD 601 F FAD 601 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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