PDBsum entry 3iv2

Tunnel analysis for: 3iv2 calculated with

MOLE 2.0

PDB id

3iv2

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

12 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.64

1.80

20.3

-1.33

-0.13

16.1

74

2

3

1

2

3

2

0

SO4 308 A

2

1.65

1.78

23.2

-2.25

-0.45

21.0

79

1

3

2

1

2

1

0

GOL 304 B

3

1.81

1.98

24.3

-0.16

-0.20

6.1

77

2

1

1

5

2

2

0

4

1.83

1.83

26.1

-0.08

-0.16

7.5

76

2

1

1

4

2

2

0

5

1.21

1.45

19.4

0.30

0.01

11.5

77

2

1

1

3

1

0

2

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.