PDBsum entry 3itf Go to PDB code:  Tunnel analysis for: 3itf calculated with MOLE 2.0 PDB id 3itf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 2.77 23.4 -0.34 0.04 15.9 85 6 0 2 3 1 0 0  MSE 45 A MSE 63 A MSE 120 A 2 1.58 1.67 25.3 -1.01 0.03 24.6 82 4 0 2 4 0 0 0  MSE 45 A 3 1.58 1.67 26.4 -0.60 -0.16 16.3 91 5 0 4 4 0 0 0  MSE 45 A 4 1.53 1.53 27.5 -0.80 -0.10 21.9 82 5 2 2 5 0 0 0  MSE 45 A MSE 140 A 5 1.35 1.54 31.7 -0.90 -0.32 17.3 83 5 2 3 4 0 0 0  MSE 45 A MSE 81 B MSE 102 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.