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PDBsum entry 3igc

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Top Page protein dna_rna ligands pores links
Pore analysis for: 3igc calculated with MOLE 2.0 PDB id
3igc
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.19 1.19 35.4 -1.02 -0.38 10.3 67 4 0 1 1 2 1 0  DG 506 B DC 507 B DC 508 B DC 509 B DT 510 B DA
521 D DT 522 D DA 523 D DG 525 D
2 1.86 2.06 36.4 -0.49 -0.26 11.7 77 3 0 1 1 1 2 0  DA 512 C DT 514 C DC 515 C DC 517 D DG 518 D DG
519 D DA 520 D DA 521 D DT 522 D
3 1.17 1.17 38.5 -1.09 -0.50 11.7 79 4 0 1 1 1 0 0  DG 506 B DC 507 B DC 508 B DC 509 B DT 510 B DT
511 B DA 520 D DA 521 D DT 522 D DA 523 D DG 525 D
4 1.85 2.05 59.0 -1.29 -0.42 15.8 77 6 1 2 1 1 2 0  DA 512 C DG 518 D DG 519 D DA 520 D DA 521 D DT
522 D
5 1.20 1.20 73.7 -1.63 -0.55 17.3 80 8 1 3 1 1 1 0  DG 506 B DC 507 B DC 508 B DC 509 B DT 510 B DT
511 B DA 512 C DG 518 D DG 519 D DA 520 D DT 522
D DA 523 D DG 525 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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