PDBsum entry 3ieb

Pore analysis for: 3ieb calculated with

MOLE 2.0

PDB id

3ieb

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.43

1.44

26.8

0.39

-0.07

7.3

80

1

1

0

4

2

0

1

MSE 44 E MSE 63 E MSE 75 E

2

2.12

2.29

31.2

-2.29

-0.39

27.5

79

6

4

2

0

2

1

0

SO4 217 B GOL 2003 B

3

3.25

3.41

33.1

-2.04

-0.64

17.4

94

6

3

7

1

0

1

0

SO4 216 C

4

1.41

1.70

33.8

-0.13

-0.27

13.0

85

2

4

0

5

1

0

0

MSE 44 C MSE 63 C MSE 75 C SO4 218 E

5

1.42

1.41

41.1

1.11

0.07

2.5

80

0

2

0

8

2

0

2

MSE 44 C MSE 63 C MSE 75 C MSE 44 E MSE 63 E MSE
75 E

6

2.68

2.81

41.7

-1.44

-0.35

16.5

93

5

2

8

3

0

1

0

SO4 1001 A GOL 2001 B

7

1.37

1.35

53.4

-0.83

-0.33

18.2

83

5

5

1

4

2

0

1

SO4 218 C SO4 219 C GOL 2002 C MSE 44 E MSE 63 E
MSE 75 E

8

1.45

1.43

54.0

-1.25

-0.37

21.4

82

5

6

1

4

3

0

0

MSE 44 C MSE 63 C MSE 75 C SO4 218 E GOL 2002 E

9

1.41

1.40

58.0

-0.85

-0.33

17.5

83

5

5

1

4

3

0

1

MSE 44 C MSE 63 C MSE 75 C SO4 218 C SO4 219 C G
OL 2002 C

10

2.12

2.30

59.6

-1.66

-0.36

20.9

91

7

6

10

3

2

1

0

SO4 1001 A SO4 217 B GOL 2001 B GOL 2003 B SO4
216 C

11

2.19

2.38

128.6

-2.10

-0.61

24.8

92

8

7

9

3

1

0

0

SO4 217 A SO4 216 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.