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PDBsum entry 3i8h
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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3i8h calculated with MOLE 2.0 PDB id
3i8h
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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3 tunnels, coloured by tunnel radius 18 tunnels, coloured by tunnel radius 18 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.42 1.42 58.9 -0.73 -0.74 8.8 75 3 1 0 0 1 0 0  G 44 A A 59 A G 111 A G 112 A C 308 A G 309 A C
330 A G 354 A G 376 A G 377 A U 387 A A 389 A C
390 A G 391 A A 608 A A 609 A G 610 A G 625 A U
626 A G 627 A G 628 A G 629 A MG 1704 A MG 1705 A
MG 2242 A MG 2466 A MG 2899 A
2 1.39 1.39 63.6 -0.58 -0.70 5.5 85 2 0 1 1 0 0 0  A 59 A G 107 A G 108 A C 110 A G 111 A G 112 A A
134 A C 135 A C 136 A C 137 A G 138 A C 218 A C
219 A G 220 A C 330 A G 354 A G 376 A G 377 A G
378 A C 379 A G 380 A A 382 A U 387 A A 389 A A
465 A G 467 A MG 1769 A MG 1770 A MG 1771 A MG
2493 A MG 2801 A
3 1.40 1.40 64.3 -0.81 -0.73 9.5 88 2 1 0 1 0 0 0  A 59 A G 107 A G 108 A C 110 A G 111 A G 112 A A
134 A C 135 A C 330 A G 354 A A 373 A A 374 A G
376 A G 377 A G 378 A C 379 A G 380 A G 384 A C
385 A U 387 A A 389 A A 453 A C 454 A C 479 A U
480 A MG 1763 A MG 1764 A MG 1765 A MG 1766 A MG
1769 A MG 1770 A MG 1771 A MG 1772 A MG 1773 A MG
1774 A MG 1775 A MG 1776 A MG 1777 A MG 1779 A MG
2608 A MG 2801 A MG 1014 S
4 1.34 1.34 67.1 -0.78 -0.79 8.5 78 3 1 0 0 0 0 0  C 40 A G 41 A G 42 A C 43 A G 44 A U 45 A A 59 A
G 111 A G 112 A C 308 A G 309 A C 330 A G 354 A G
376 A G 377 A U 387 A A 389 A C 390 A G 391 A G
392 A A 393 A G 394 A C 395 A G 396 A MG 1642 A
MG 1864 A MG 1876 A MG 2029 A MG 2242 A MG 2456 A
MG 2648 A
5 1.24 1.24 68.3 -0.62 -0.80 6.3 80 2 1 0 0 0 0 0  U 45 A G 46 A C 47 A U 49 A A 50 A A 51 A G 52 A
A 53 A A 59 A G 111 A G 112 A U 114 A C 308 A G
309 A C 330 A A 353 A G 354 A C 355 A A 356 A G
357 A U 358 A U 359 A A 360 A G 361 A C 366 A G
376 A G 377 A U 387 A A 389 A C 390 A G 391 A MG
1615 A MG 1636 A MG 1638 A MG 1642 A MG 1876 A MG
1946 A MG 1948 A MG 2040 A MG 2202 A MG 2242 A MG
2383 A
6 1.38 1.38 67.8 -0.62 -0.80 6.4 80 2 1 0 0 0 0 0  U 45 A G 46 A C 47 A A 59 A G 111 A G 112 A U 114
A C 308 A G 309 A C 330 A G 354 A C 355 A A 356 A
G 357 A U 358 A U 359 A G 362 A U 365 A C 366 A G
376 A G 377 A U 387 A A 389 A C 390 A G 391 A MG
1636 A MG 1637 A MG 1638 A MG 1642 A MG 1876 A MG
1946 A MG 1948 A MG 2242 A MG 2383 A
7 1.37 1.37 75.3 -0.63 -0.80 6.5 80 2 1 0 0 0 0 0  U 45 A C 58 A A 59 A G 111 A G 112 A C 308 A G
309 A C 330 A G 354 A C 355 A A 356 A C 369 A C
370 A G 371 A G 376 A G 377 A C 386 A U 387 A G
388 A A 389 A C 390 A G 391 A G 392 A A 393 A MG
1642 A MG 1742 A MG 1743 A MG 1876 A MG 2002 A MG
2242 A
8 1.35 1.35 79.4 -0.67 -0.77 6.7 77 2 0 0 0 0 0 0  A 59 A G 108 A A 109 A C 110 A G 111 A G 112 A C
123 A G 124 A U 125 A G 126 A G 127 A G 128 A A
134 A U 229 A G 230 A G 231 A G 232 A C 233 A C
234 A C 312 A A 313 A A 325 A G 326 A C 328 A C
330 A G 354 A G 376 A G 377 A G 378 A U 387 A A
389 A U 605 A G 606 A MG 1721 A MG 1895 A MG 1919
A MG 1931 A MG 2082 A MG 2354 A MG 2801 A MG 2811
A
9 1.36 1.36 81.7 -0.59 -0.77 6.3 75 3 1 0 1 0 0 0  G 31 A U 45 A G 46 A C 47 A C 48 A U 49 A A 59 A
G 111 A G 112 A G 113 A U 114 A G 115 A U 287 A A
288 A G 289 A U 304 A G 305 A G 306 A C 307 A C
308 A G 309 A C 330 A G 354 A C 355 A A 356 A G
376 A G 377 A U 387 A A 389 A C 390 A G 391 A MG
1638 A MG 1642 A MG 1643 A MG 1876 A MG 1946 A MG
1948 A MG 2242 A MG 2656 A MG 3057 A
10 1.33 1.33 84.0 -0.67 -0.77 6.6 83 1 0 0 0 0 0 0  A 59 A G 108 A A 109 A C 110 A G 111 A G 112 A A
134 A G 230 A G 231 A G 232 A C 233 A G 258 A G
259 A G 260 A A 262 A A 263 A C 267 A C 268 A C
269 A A 321 A A 325 A G 326 A A 327 A C 328 A C
330 A G 354 A G 376 A G 377 A G 378 A U 387 A A
389 A U 1436 A C 1437 A G 1438 A MG 2811 A MG
3070 A MG 3091 A
11 1.39 1.39 85.1 -0.73 -0.80 7.9 78 3 2 0 0 0 0 0  U 5 A G 6 A G 29 A U 30 A G 44 A A 59 A G 111 A G
112 A C 295 A U 296 A G 297 A G 299 A G 306 A C
307 A C 308 A G 309 A C 330 A G 354 A G 376 A G
377 A U 387 A A 389 A C 390 A G 391 A C 400 A A
609 A G 610 A A 611 A C 612 A C 623 A C 624 A G
629 A G 630 A G 631 A MG 1728 A MG 1729 A MG 1867
A MG 1906 A MG 1921 A MG 1926 A MG 1940 A MG 1989
A MG 2132 A MG 2143 A MG 2242 A MG 2293 A MG 2437
A MG 2466 A MG 2700 A MG 2765 A
12 1.41 1.41 87.5 -0.93 -0.76 10.3 77 5 3 1 1 0 1 0  G 29 A U 30 A G 44 A A 59 A G 111 A G 112 A C 295
A G 306 A C 307 A C 308 A G 309 A C 330 A G 354 A
G 376 A G 377 A U 387 A A 389 A C 390 A G 391 A C
400 A C 401 A A 609 A G 610 A C 612 A C 613 A A
614 A C 615 A A 622 A C 623 A C 624 A MG 1934 A
MG 2242 A MG 2466 A MG 2527 A MG 3141 A
13 1.38 1.38 89.5 -0.60 -0.78 5.8 83 1 0 0 0 0 0 0  A 59 A G 108 A A 109 A C 110 A G 111 A G 112 A U
118 A A 120 A A 134 A G 230 A G 231 A G 232 A C
233 A G 251 A U 252 A C 267 A C 268 A C 312 A A
313 A C 314 A G 319 A C 320 A A 325 A G 326 A C
328 A C 330 A G 354 A G 376 A G 377 A G 378 A U
387 A A 389 A C 1426 A U 1427 A A 1428 A C 1429 A
G 1467 A A 1468 A MG 1919 A MG 2801 A MG 2811 A
14 1.38 1.38 105.1 -0.62 -0.78 6.0 83 1 0 0 0 0 0 0  A 59 A G 108 A A 109 A C 110 A G 111 A G 112 A A
134 A G 230 A G 231 A G 232 A C 233 A C 267 A C
312 A A 313 A C 314 A A 315 A G 316 A G 319 A C
320 A A 325 A G 326 A C 328 A A 329 A C 330 A G
333 A C 334 A C 335 A C 336 A G 348 A A 349 A G
350 A G 351 A G 354 A G 376 A G 377 A G 378 A U
387 A A 389 A MG 1687 A MG 1919 A MG 2008 A MG
2598 A MG 2764 A MG 2801 A MG 2811 A MG 3004 A
15 1.42 1.42 127.4 -0.63 -0.71 7.4 76 5 1 0 1 1 1 0  G 29 A U 30 A G 44 A A 59 A G 111 A G 112 A C 237
A G 238 A G 292 A G 293 A U 294 A C 295 A U 296 A
G 297 A A 300 A G 301 A G 306 A C 307 A C 308 A G
309 A C 330 A G 354 A G 376 A G 377 A U 387 A A
389 A C 390 A G 391 A C 400 A C 596 A G 597 A A
609 A G 610 A A 611 A C 612 A C 623 A C 624 A G
631 A A 632 A G 633 A C 634 A G 635 A U 636 A G
637 A MG 1728 A MG 1729 A MG 1961 A MG 2192 A MG
2242 A MG 2358 A MG 2466 A MG 2588 A MG 2062 T
16 1.46 1.46 136.2 -0.91 -0.77 8.9 85 6 1 2 0 0 0 0  A 26 A G 27 A G 28 A G 29 A U 30 A G 44 A A 59 A
G 111 A G 112 A C 295 A G 306 A C 307 A C 308 A G
309 A C 330 A G 354 A G 376 A G 377 A U 387 A A
389 A C 390 A G 391 A C 400 A C 401 A G 416 A U
427 A G 428 A A 498 A G 500 A C 501 A G 502 A C
503 A C 504 A C 508 A A 509 A C 522 A A 523 A G
524 A G 537 A G 540 A G 541 A G 542 A C 549 A G
550 A U 551 A A 609 A G 610 A C 623 A C 624 A MG
1578 A MG 1580 A MG 2056 A MG 2242 A MG 2452 A MG
2466 A MG 2886 A MG 3092 A
17 1.38 1.38 152.8 -0.62 -0.75 6.8 73 6 1 0 1 0 1 0  G 29 A U 30 A G 44 A A 59 A G 111 A G 112 A G 238
A U 239 A C 240 A C 241 A C 242 A A 243 A U 244 A
G 281 A G 292 A G 293 A U 294 A C 295 A U 296 A G
297 A A 300 A G 301 A G 302 A A 303 A U 304 A G
306 A C 307 A C 308 A G 309 A C 330 A G 354 A G
376 A G 377 A U 387 A A 389 A C 390 A G 391 A C
400 A A 609 A G 610 A A 611 A C 612 A C 623 A C
624 A G 631 A A 632 A A 759 A G 760 A G 761 A C
762 A G 763 A G 765 A C 812 A C 882 A G 895 A C
896 A C 897 A G 898 A G 903 A C 904 A U 905 A G
906 A MG 1728 A MG 1729 A MG 1880 A MG 1905 A MG
1961 A MG 2192 A MG 2242 A MG 2358 A MG 2466 A MG
2588 A MG 2968 A
18 1.29 1.32 16.4 1.92 0.68 2.7 65 1 0 1 5 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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