PDBsum entry 3i4m Go to PDB code:  Pore analysis for: 3i4m calculated with MOLE 2.0 PDB id 3i4m Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   27 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.57 5.77 28.4 -2.84 -0.52 31.2 86 6 2 2 0 1 1 0  U 2 P 2 1.26 1.49 41.8 -0.40 -0.07 16.4 90 4 5 3 7 0 2 0   3 3.18 3.24 42.1 -2.16 -0.72 28.7 86 5 6 4 4 0 0 0   4 1.39 1.81 48.3 -1.95 -0.42 26.5 85 7 6 7 7 1 1 0   5 2.84 2.84 52.1 -1.68 -0.63 21.0 84 7 5 4 5 0 1 0  DC 5 N DT 6 N DA 10 T DA 11 T 6 1.70 4.19 68.1 -2.58 -0.48 29.5 78 7 6 5 1 2 4 0   7 1.54 1.87 70.9 -2.05 -0.42 27.9 80 7 7 6 5 3 2 0   8 1.38 1.54 80.0 -1.63 -0.48 23.2 84 11 11 4 5 0 2 0  DG 2 N DT 3 N DA 4 N DC 5 N DT 6 N DA 11 T 9 2.78 2.78 80.2 -1.71 -0.50 18.2 81 8 1 2 4 1 2 0  DC 5 N DT 6 N DT 7 N DG 8 N DA 9 N DG 10 N DC 7 T DT 8 T DA 10 T 10 1.66 2.01 83.6 -1.48 -0.39 20.4 86 6 5 5 9 0 2 0  DG 8 N DA 9 N DG 10 N DG 12 T DT 13 T DA 14 T DT 17 T 11 1.65 2.01 85.7 -1.86 -0.41 22.8 84 10 4 6 7 0 3 0  DA 1 N DG 2 N DT 3 N DA 4 N DC 5 N DT 6 N DA 11 T 12 1.41 1.54 86.4 -1.88 -0.54 28.1 85 13 14 5 5 0 1 0   13 1.40 1.71 93.6 -1.69 -0.40 25.6 78 11 8 6 9 3 2 0   14 2.07 2.08 97.2 -1.79 -0.63 22.7 77 7 4 1 4 1 3 0  DG 8 N DA 9 N DG 10 N U 2 P U 3 P C 4 P C 5 P A 6 P DG 12 T DT 13 T DA 14 T DC 15 T DT 16 T DT 17 T DG 24 T DT 26 T 15 1.66 1.82 99.2 -2.27 -0.49 25.7 81 10 6 3 6 0 3 0  DC 5 N DT 6 N DC 9 T DA 10 T 16 1.65 2.08 105.2 -1.38 -0.30 20.8 82 9 5 3 10 1 4 0  U 2 P U 3 P C 4 P C 5 P A 6 P DT 17 T DG 24 T DT 26 T 17 1.72 2.07 106.9 -2.04 -0.47 27.6 84 15 9 6 9 0 2 0  DG 2 N 18 2.84 2.84 111.1 -1.72 -0.42 21.3 81 11 3 3 3 1 3 0  DA 1 N DG 2 N DT 3 N DA 4 N DC 5 N DT 6 N U 2 P U 3 P C 4 P C 5 P A 6 P DA 11 T DT 17 T DG 24 T DT 26 T 19 1.81 2.01 116.0 -1.13 -0.38 17.3 86 11 8 12 8 2 1 2   20 1.78 4.45 118.1 -1.38 -0.24 18.8 82 13 9 10 11 6 1 0   21 3.27 3.35 132.3 -1.97 -0.47 26.7 82 16 9 3 5 1 2 0  DG 2 N U 2 P U 3 P C 4 P C 5 P A 6 P DT 17 T DG 24 T DT 26 T 22 1.66 1.82 135.9 -2.08 -0.62 24.2 80 15 9 6 5 0 4 0  DT 6 N DT 7 N DG 8 N DA 9 N DG 10 N DG 12 T DT 13 T DA 14 T 23 1.83 2.00 147.7 -1.90 -0.48 25.3 81 19 9 8 8 5 1 2  DC 5 N DT 6 N DC 9 T DA 10 T 24 1.36 1.51 155.1 -1.62 -0.43 24.7 83 18 14 4 10 1 4 0  DG 2 N U 2 P U 3 P C 4 P C 5 P A 6 P DT 17 T DG 24 T DT 26 T 25 1.66 1.82 168.0 -2.34 -0.62 27.9 80 20 11 6 4 1 4 0  DT 6 N U 2 P U 3 P C 4 P C 5 P A 6 P DA 14 T DC 15 T DT 16 T DT 17 T DG 24 T DT 26 T 26 2.25 2.93 166.9 -1.35 -0.36 19.4 81 11 12 8 10 5 7 0  DC 5 N DT 6 N DC 9 T DA 10 T DA 11 T 27 1.66 1.82 179.2 -2.05 -0.53 25.4 79 21 11 9 5 5 4 2   28 1.81 1.98 183.6 -1.74 -0.54 23.5 80 22 11 10 6 5 2 2  DT 6 N DT 7 N DG 8 N DA 9 N DG 10 N DG 12 T DT 13 T DA 14 T 29 1.76 1.75 181.7 -1.95 -0.46 24.1 82 19 20 14 8 6 2 0   30 1.80 1.77 277.0 -1.78 -0.46 24.9 80 29 14 11 10 4 9 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.