PDBsum entry 3ht5 Go to PDB code:  Tunnel analysis for: 3ht5 calculated with MOLE 2.0 PDB id 3ht5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.34 1.34 25.8 -0.75 -0.24 10.2 79 3 0 3 4 3 0 0  PMP 6236 A 2 1.24 2.46 30.3 -0.81 -0.27 10.7 85 2 0 2 4 2 0 0   3 1.16 1.16 16.0 -0.92 -0.34 14.2 75 2 1 0 2 1 0 0   4 1.15 1.15 17.6 -1.31 -0.17 17.6 72 2 2 0 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.