PDBsum entry 3ho7

Tunnel analysis for: 3ho7 calculated with

MOLE 2.0

PDB id

3ho7

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.13

1.13

25.6

-1.20

-0.33

17.8

80

4

1

2

3

2

1

0

2

1.20

2.62

17.5

-1.93

-0.76

11.5

86

1

1

6

1

1

1

0

3

1.61

3.09

17.7

-2.68

-0.77

22.6

93

2

2

5

1

0

0

0

4

1.57

1.71

18.2

-2.26

-0.69

21.4

89

2

2

5

2

0

0

0

5

1.57

1.70

19.4

-2.41

-0.70

22.5

86

2

3

4

2

0

0

0

6

1.25

2.72

22.6

-2.18

-0.67

15.3

86

2

1

6

2

1

1

0

7

1.24

2.73

23.7

-2.45

-0.66

18.2

83

2

2

5

2

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.