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PDBsum entry 3git

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3git calculated with MOLE 2.0 PDB id
3git
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.77 4.63 33.7 -1.79 -0.37 18.4 75 3 5 2 2 2 2 0  
2 1.76 4.62 52.1 -2.16 -0.51 23.5 75 4 7 3 1 3 2 0  
3 1.70 2.16 64.3 -1.83 -0.51 25.8 86 6 8 4 4 1 0 0  
4 1.61 1.67 72.9 -1.40 -0.35 21.9 84 9 8 9 6 5 0 2  H2S 740 B SO4 744 B SO4 744 F
5 1.52 1.78 74.2 -1.58 -0.53 19.0 81 7 9 6 5 3 1 1  H2S 740 B
6 1.71 3.75 91.7 -1.66 -0.38 23.0 83 12 9 7 6 4 0 1  H2S 740 B SO4 744 B
7 1.66 1.72 97.2 -2.19 -0.53 28.9 84 15 13 9 6 4 0 1  SO4 744 D H2S 740 F SO4 744 F
8 1.22 1.45 99.6 -2.42 -0.56 29.7 85 10 10 4 3 2 0 0  
9 1.71 3.75 100.4 -1.89 -0.59 17.5 85 8 6 8 1 1 3 0  SO4 741 D
10 2.09 2.33 131.3 -2.05 -0.66 24.9 86 16 16 8 8 2 1 0  SO4 744 D SO4 744 F
11 1.28 1.98 129.8 -1.81 -0.44 25.3 84 14 13 8 7 4 0 1  H2S 740 B SO4 744 B
12 1.75 1.85 132.7 -1.70 -0.46 24.2 85 14 13 8 9 4 1 1  H2S 740 B SO4 744 B SO4 741 F SO4 744 F
13 1.28 1.42 134.5 -2.02 -0.51 27.6 86 9 11 2 6 0 2 0  
14 1.23 1.46 153.5 -2.24 -0.60 25.9 84 16 13 8 6 2 4 0  SO4 744 D
15 1.22 1.38 153.0 -2.28 -0.60 22.3 86 11 10 9 3 1 4 0  SO4 741 D
16 1.68 1.80 154.2 -1.74 -0.48 18.3 84 10 10 9 5 2 4 0  SO4 741 D
17 1.75 1.84 154.1 -1.82 -0.46 21.9 82 14 13 10 7 4 4 1  SO4 741 D SO4 744 F
18 1.73 2.39 157.0 -2.09 -0.55 25.1 83 17 13 8 6 2 4 0  SO4 744 D SO4 741 F
19 1.33 1.55 156.1 -2.02 -0.54 24.9 83 16 14 8 7 3 4 1  H2S 740 B SO4 744 B
20 1.38 1.60 161.9 -2.01 -0.52 24.5 82 15 14 9 7 4 4 1  SO4 744 F
21 1.74 2.28 174.5 -2.05 -0.52 24.1 84 17 14 9 8 2 4 0  SO4 744 D
22 1.67 1.99 177.0 -1.92 -0.49 23.7 83 17 15 9 8 3 4 1  H2S 740 B SO4 744 B
23 1.22 1.40 178.8 -1.97 -0.60 26.7 86 11 14 3 6 1 2 0  
24 1.37 1.47 182.0 -2.01 -0.55 23.3 84 13 14 8 7 2 5 0  SO4 741 A SO4 741 F
25 1.56 2.04 188.2 -1.75 -0.59 19.8 85 15 16 9 8 2 5 0  SO4 741 D SO4 744 F
26 1.19 1.39 196.0 -1.93 -0.64 22.3 84 16 17 8 9 2 5 0  SO4 744 F
27 1.22 1.44 198.9 -1.98 -0.52 23.1 84 13 15 9 10 2 5 0  SO4 741 A
28 1.23 1.43 211.3 -1.82 -0.58 19.1 81 17 11 8 5 2 7 0  SO4 741 A
29 1.66 2.01 213.2 -1.79 -0.59 20.7 85 16 18 9 10 2 5 0  SO4 744 F
30 1.27 1.48 263.9 -1.98 -0.58 20.4 82 20 15 9 7 2 8 0  SO4 741 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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