PDBsum entry 3gfi Go to PDB code:  Tunnel analysis for: 3gfi calculated with MOLE 2.0 PDB id 3gfi Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.77 2.08 15.8 0.29 0.37 3.3 79 1 0 3 3 4 0 0   2 1.76 2.06 17.2 -0.52 0.50 7.8 74 3 0 1 1 4 0 0   3 1.76 2.07 18.3 -0.38 0.30 5.2 76 2 0 2 1 4 0 0   4 1.79 2.04 19.0 0.87 0.34 3.2 79 1 0 2 2 3 0 0   5 1.79 2.03 28.6 -0.94 0.49 13.5 72 4 0 1 3 5 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.