PDBsum entry 3gdk Go to PDB code:  Pore analysis for: 3gdk calculated with MOLE 2.0 PDB id 3gdk Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.14 2.14 25.2 -0.79 -0.10 6.2 83 2 2 2 1 2 1 0   2 1.65 1.65 27.2 -0.58 -0.34 17.6 90 2 3 1 3 0 0 0   3 3.72 3.78 37.8 -1.58 -0.51 21.4 86 4 5 3 5 0 0 1   4 1.30 1.30 47.3 -1.78 -0.28 21.9 84 5 6 3 3 2 1 0   5 1.66 1.66 50.2 -1.81 -0.60 23.0 83 4 6 3 4 0 0 1   6 1.30 1.30 50.9 -2.04 -0.59 22.9 86 6 6 3 2 1 1 0   7 1.18 1.87 64.2 -1.87 -0.55 21.0 84 8 10 4 2 2 2 0   8 1.19 2.08 166.2 -1.90 -0.63 23.7 80 10 10 2 6 1 3 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.