PDBsum entry 3gcs

Tunnel analysis for: 3gcs calculated with

MOLE 2.0

PDB id

3gcs

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

3 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.27

1.42

16.4

-1.12

-0.35

14.3

93

2

2

3

2

1

0

0

2

1.34

1.34

16.9

2.31

1.02

0.7

64

0

0

0

8

2

1

0

BOG 402 A

3

1.69

1.83

16.9

-1.14

-0.05

13.0

75

1

3

2

2

1

1

0

BOG 402 A

4

1.34

1.34

19.6

0.09

0.30

9.3

80

1

3

2

2

1

1

0

BOG 402 A

5

2.10

4.09

23.1

0.04

0.22

9.3

70

1

3

2

5

1

1

0

BOG 402 A

6

1.25

2.35

23.3

0.45

0.35

8.0

72

1

3

2

6

1

1

0

BOG 402 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.