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PDBsum entry 3fgo

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3fgo calculated with MOLE 2.0 PDB id
3fgo
Pores calculated on whole structure Pores calculated excluding ligands

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22 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.42 1.83 25.0 1.36 0.12 1.0 92 0 0 1 6 0 1 0  
2 1.17 1.17 27.5 0.15 -0.10 10.2 71 1 3 0 2 2 1 1  
3 1.42 2.79 28.0 -1.03 0.16 23.2 82 3 4 0 2 2 0 0  
4 1.34 1.61 30.1 -0.68 -0.22 15.2 74 2 3 0 5 1 3 0  
5 1.47 2.65 34.6 -1.93 -0.34 29.1 76 3 6 1 3 2 1 0  
6 1.34 1.51 34.9 -0.45 -0.06 15.2 77 2 3 0 6 3 2 0  
7 1.18 1.17 38.7 0.57 0.05 5.6 70 1 1 0 7 3 3 1  
8 1.34 1.51 40.3 -0.37 -0.04 11.9 76 2 2 1 7 3 2 0  
9 1.35 1.51 43.2 -0.08 0.15 10.9 76 4 2 0 6 3 2 0  
10 1.18 1.56 111.5 1.28 0.59 5.6 77 3 4 4 24 8 2 1  CZA 1005 A MN 1006 A
11 1.56 1.55 44.0 -1.52 -0.48 17.0 79 2 8 3 1 0 2 1  
12 1.56 1.56 44.1 -1.09 -0.54 13.2 84 3 4 4 1 0 2 1  
13 1.40 1.40 41.6 -1.87 -0.61 24.2 90 3 3 2 2 0 0 0  
14 1.60 2.32 41.2 -1.50 -0.40 19.2 89 7 4 5 5 0 0 0  ACP 1007 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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