PDBsum entry 3ff9 Go to PDB code:  Tunnel analysis for: 3ff9 calculated with MOLE 2.0 PDB id 3ff9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 1.42 16.6 -1.45 -0.21 27.6 78 3 1 0 2 0 0 1   2 1.41 1.41 22.0 -1.32 -0.28 24.0 77 2 1 0 2 0 1 1   3 1.31 2.51 28.4 0.07 0.10 18.4 80 4 2 1 5 0 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.