PDBsum entry 3fef

Pore analysis for: 3fef calculated with

MOLE 2.0

PDB id

3fef

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

6 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.80

2.28

25.8

-1.83

-0.39

26.5

78

6

3

1

2

1

0

0

SO4 2 A

2

1.31

1.91

33.5

0.40

0.11

11.1

72

3

2

0

5

4

0

0

MSE 186 A

3

1.76

2.03

33.8

-1.44

-0.32

13.2

78

3

3

6

4

2

2

0

MSE 391 A

4

1.88

2.01

36.4

-1.31

-0.35

11.8

76

2

3

5

3

2

2

0

MSE 391 B

5

3.11

3.11

36.7

-1.29

-0.15

25.5

74

6

3

1

1

2

0

0

SO4 1 B

6

1.72

1.87

38.7

-1.03

-0.22

9.7

81

3

2

7

6

1

2

0

MSE 391 C

7

1.79

2.63

40.6

-1.59

-0.42

16.3

77

3

6

5

3

2

2

0

MSE 391 D

8

1.70

2.57

42.0

-0.40

-0.19

6.3

81

2

2

5

8

1

3

0

MSE 391 C

9

1.47

1.78

48.1

-1.12

-0.13

12.7

72

4

2

6

6

4

2

0

10

1.41

1.72

48.3

-1.05

-0.16

11.8

72

4

2

6

6

4

2

0

11

1.20

1.19

123.3

-1.34

-0.27

13.0

83

12

5

16

10

2

5

1

SO4 1 B MSE 153 B MSE 391 B MG 456 B

12

3.47

3.52

29.2

-1.48

-0.22

27.4

77

6

5

1

1

1

0

0

SO4 3 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.