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PDBsum entry 3fde
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Tunnel analysis for: 3fde calculated with  MOLE 2.0
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PDB id
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3fde
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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0 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.25 |
1.25 |
25.8 |
-0.61 |
-0.25 |
11.1 |
83 |
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3 |
0 |
1 |
2 |
1 |
0 |
0 |
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UNL 636 B DA 404 C DT 405 C DG 406 C 5CM 407 C DG
408 C UNL 456 C UNL 637 C
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2 |
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1.21 |
1.21 |
26.6 |
-1.03 |
-0.37 |
15.5 |
84 |
3 |
0 |
0 |
2 |
1 |
0 |
0 |
DG 406 C 5CM 407 C DG 408 C DC 409 C DT 410 C DG
421 F DT 422 F DC 423 F EDO 513 F
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3 |
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1.25 |
1.25 |
26.8 |
-1.32 |
-0.43 |
18.0 |
82 |
6 |
0 |
0 |
2 |
1 |
0 |
0 |
DG 406 C 5CM 407 C DG 408 C DG 421 F DT 422 F
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4 |
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1.21 |
1.21 |
28.4 |
-1.49 |
-0.49 |
19.7 |
81 |
7 |
0 |
0 |
1 |
1 |
0 |
0 |
DG 406 C 5CM 407 C DG 408 C DG 421 E DG 421 F DT
422 F
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5 |
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1.23 |
1.22 |
42.0 |
-1.47 |
-0.51 |
19.7 |
86 |
7 |
1 |
1 |
2 |
1 |
0 |
0 |
EDO 632 A DG 406 C 5CM 407 C DG 408 C DC 409 C DC
423 F DA 424 F EDO 513 F
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6 |
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1.21 |
1.20 |
45.6 |
-1.55 |
-0.50 |
20.4 |
83 |
8 |
1 |
0 |
2 |
1 |
0 |
0 |
EDO 632 A DG 406 C 5CM 407 C DG 408 C DC 409 C DC
423 F DA 424 F DG 425 F EDO 513 F
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program