PDBsum entry 3fd2 Go to PDB code:  Pore analysis for: 3fd2 calculated with MOLE 2.0 PDB id 3fd2 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.68 1.68 34.9 -1.42 -0.62 18.4 78 3 2 2 4 1 0 0  DC 510 B DG 511 B DG 513 B DG 565 C DA 566 C DC 567 C DG 568 C 2 1.23 1.23 35.2 -0.75 -0.80 9.9 70 1 2 0 1 0 0 0  DC 510 B DG 511 B DG 513 B DA 514 B DG 515 B DA 516 B DC 517 B DA 518 B DG 519 B DC 560 C DT 561 C DC 562 C DA 563 C DC 564 C DG 565 C DA 566 C DC 567 C DG 568 C 3 1.24 1.24 44.4 -1.28 -0.63 15.1 80 3 2 2 3 1 0 0  DG 511 B DG 513 B DA 514 B DG 515 B DA 516 B DC 517 B DA 518 B DG 519 B DC 560 C DT 561 C DC 562 C DA 563 C DC 564 C DG 565 C DA 566 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.