PDBsum entry 3fay Go to PDB code:  Tunnel analysis for: 3fay calculated with MOLE 2.0 PDB id 3fay Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.34 2.27 23.3 0.76 0.08 5.3 80 2 1 4 7 3 0 0  MSE 1138 A MSE 1231 A 2 1.33 1.51 27.3 -0.04 -0.17 10.9 80 3 2 3 6 3 0 0  MSE 1138 A MSE 1231 A 3 1.16 1.17 39.5 0.62 0.33 6.8 75 3 2 2 11 7 3 0  MSE 1160 A MSE 1196 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.