PDBsum entry 3f9d Go to PDB code:  Tunnel analysis for: 3f9d calculated with MOLE 2.0 PDB id 3f9d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.76 1.97 27.3 -0.07 -0.02 11.8 79 2 3 1 6 1 0 0  LSR 138 B 2 1.41 4.44 29.1 0.73 0.55 10.9 79 1 1 2 8 3 1 0  LSR 138 B 3 1.43 3.91 29.6 0.42 0.46 14.7 77 2 3 0 7 2 0 0  LSR 138 B 4 1.75 1.96 31.8 0.69 0.19 8.2 83 1 2 1 9 1 0 0  LSR 138 B 5 1.33 1.59 33.2 -0.16 0.01 14.0 83 2 2 3 8 2 1 0  LSR 138 B 6 1.41 3.86 34.0 1.23 0.64 10.2 81 1 2 0 10 2 0 0  LSR 138 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.