PDBsum entry 3f8d Go to PDB code:  Pore analysis for: 3f8d calculated with MOLE 2.0 PDB id 3f8d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.66 1.94 25.2 -1.25 -0.19 21.2 81 5 0 1 3 1 1 0  SO4 4163 C 2 1.46 1.47 32.1 0.50 0.00 11.9 82 2 5 2 8 1 0 1  FAD 2003 C 3 1.80 1.91 50.9 -2.42 -0.56 27.9 84 5 5 5 1 1 0 0   4 1.94 1.93 52.6 -1.17 -0.43 14.1 77 3 4 5 6 4 1 1  FAD 2004 D 5 1.93 1.93 53.0 -1.22 -0.47 16.2 80 5 4 4 6 2 1 1  FAD 2004 D SO4 4162 D 6 1.44 1.45 68.0 -0.99 -0.26 18.7 78 8 6 4 10 2 2 1  FAD 2004 D SO4 4162 D 7 1.43 1.42 69.4 -0.79 -0.29 14.8 78 5 7 1 10 2 3 1  FAD 2004 D 8 1.76 1.75 145.8 -1.28 -0.38 18.5 78 8 13 11 10 8 0 2  FAD 2001 A SO4 4159 A FAD 2002 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.