PDBsum entry 3f4b

Pore analysis for: 3f4b calculated with

MOLE 2.0

PDB id

3f4b

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

4 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.40

1.40

30.9

-0.04

0.06

8.2

73

1

2

1

5

3

2

0

2

2.79

2.99

31.6

-1.37

-0.14

17.9

85

3

3

2

4

2

0

0

TCL 400 A

3

1.20

1.92

37.7

0.55

0.44

2.6

77

1

0

1

10

7

2

0

TCL 500 B NAD 550 B

4

1.29

1.36

38.6

-0.47

0.10

9.4

68

1

4

1

4

6

3

0

5

1.41

1.41

40.8

0.14

0.09

5.9

69

1

2

1

6

5

2

0

6

1.15

1.76

54.2

-0.25

-0.01

9.3

78

3

3

3

11

5

1

0

TCL 500 B NAD 550 B

7

1.18

1.91

53.8

-0.17

0.09

5.4

76

2

1

1

8

8

2

0

TCL 500 B NAD 550 B

8

1.23

2.02

58.5

-0.28

0.28

6.6

78

2

2

3

10

7

2

0

TCL 400 C NAD 450 C

9

1.14

1.85

64.8

-0.51

0.03

9.6

80

3

4

4

10

6

1

0

TCL 400 C NAD 450 C

10

1.17

1.74

85.4

-0.73

-0.06

13.7

80

7

5

8

11

6

1

0

TCL 500 D NAD 550 D

11

1.41

1.41

124.9

-1.06

-0.14

18.0

78

7

8

5

14

8

1

0

TCL 500 B NAD 550 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.