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PDBsum entry 3f1h
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Tunnel analysis for: 3f1h calculated with  MOLE 2.0
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PDB id
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3f1h
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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24 tunnels,
coloured by tunnel radius |
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23 tunnels,
coloured by
tunnel radius
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23 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.18 |
1.18 |
95.0 |
-0.46 |
-0.79 |
4.2 |
72 |
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1 |
0 |
0 |
0 |
0 |
0 |
0 |
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G 530 A C 531 A G 533 A U 534 A C 535 A A 536 A C
537 A G 539 A G 540 A C 541 A G 549 A G 550 A G
551 A G 552 A U 553 A U 554 A G 556 A U 557 A G
558 A G 559 A C 560 A G 561 A U 562 A A 572 A G
573 A C 574 A C 2021 A A 2030 A A 2031 A G 2032 A
A 2033 A G 2035 A C 2036 A G 2037 A C 2498 A C
2499 A MG 5110 A MG 5368 A
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2 |
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1.28 |
1.28 |
101.0 |
-0.71 |
-0.57 |
11.3 |
85 |
6 |
0 |
0 |
3 |
0 |
0 |
0 |
C 461 A A 470 A A 471 A G 508 A A 572 A G 573 A C
574 A U 576 A G 577 A A 578 A G 579 A U 1255 A G
1256 A G 1259 A C 1261 A A 1321 A A 1322 A A 2015
A U 2016 A U 2017 A G 2018 A A 2020 A A 2030 A A
2031 A G 2032 A A 2033 A U 2034 A G 2035 A A 2054
A C 2055 A A 2057 A A 2058 A C 2498 A C 2499 A MG
5214 A MG 5366 A
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3 |
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1.23 |
1.23 |
103.2 |
-0.70 |
-0.67 |
8.4 |
82 |
5 |
1 |
1 |
2 |
0 |
1 |
0 |
U 9 A G 10 A U 525 A A 526 A A 528 A G 530 A C
531 A G 533 A G 556 A U 557 A G 558 A G 559 A C
560 A G 561 A U 562 A A 572 A G 573 A C 574 A C
2021 A A 2030 A A 2031 A G 2032 A A 2033 A G 2035
A C 2036 A G 2037 A C 2498 A C 2499 A MG 5110 A
MG 5368 A MG 5016 N
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4 |
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1.19 |
1.19 |
106.7 |
-0.70 |
-0.77 |
7.2 |
77 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
A 6 A G 530 A A 572 A G 573 A C 574 A A 2020 A U
2022 A A 2030 A A 2031 A G 2032 A A 2033 A U 2034
A G 2035 A A 2042 A C 2043 A C 2044 A C 2045 A A
2054 A C 2055 A C 2498 A C 2499 A U 2615 A C 2616
A C 2617 A G 2618 A C 2622 A G 2623 A G 2627 A C
2628 A A 2629 A G 2630 A G 2631 A A 2632 A G 2633
A G 2634 A C 2635 A A 2775 A A 2776 A G 2777 A A
2778 A G 2782 A G 2783 A A 2826 A C 2827 A MG
5491 A MG 5511 A
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5 |
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1.25 |
1.25 |
108.0 |
-0.48 |
-0.79 |
4.2 |
89 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
A 572 A G 573 A C 574 A U 1026 A A 1027 A U 1130
A A 2020 A U 2022 A G 2024 A C 2025 A C 2026 A G
2027 A U 2028 A A 2030 A A 2031 A G 2032 A A 2033
A U 2034 A G 2035 A G 2053 A A 2054 A C 2055 A G
2455 A C 2456 A U 2457 A G 2458 A A 2459 A U 2460
A C 2461 A C 2463 A C 2464 A G 2482 A G 2485 A G
2486 A G 2487 A A 2488 A G 2489 A G 2490 A C 2498
A C 2499 A C 2617 A MG 5462 A MG 5463 A C 88 B
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6 |
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1.30 |
1.30 |
117.3 |
-0.48 |
-0.79 |
4.3 |
89 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
A 572 A G 573 A C 574 A C 949 A C 961 A G 979 A C
985 A A 1001 A G 1002 A G 1003 A G 1025 A U 1026
A U 1130 A C 1145 A C 1146 A C 1147 A A 1148 A A
2020 A U 2022 A G 2024 A C 2025 A C 2026 A G 2027
A U 2028 A G 2029 A A 2030 A A 2031 A G 2032 A A
2033 A U 2034 A G 2035 A G 2053 A A 2054 A C 2055
A G 2455 A C 2456 A U 2457 A G 2489 A G 2490 A C
2498 A C 2499 A C 2617 A C 84 B G 85 B G 86 B G
87 B C 88 B G 89 B i:A
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7 |
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1.24 |
1.24 |
120.0 |
-0.52 |
-0.77 |
5.0 |
85 |
3 |
0 |
1 |
1 |
0 |
0 |
0 |
A 572 A G 573 A C 574 A G 1022 A U 1023 A U 1026
A C 1123 A C 1124 A G 1125 A A 1127 A A 1128 A A
1129 A U 1130 A U 1133 A A 2020 A U 2022 A G 2024
A C 2025 A C 2026 A G 2027 A U 2028 A A 2030 A A
2031 A G 2032 A A 2033 A U 2034 A G 2035 A G 2053
A A 2054 A C 2055 A G 2455 A C 2456 A G 2489 A G
2490 A C 2498 A C 2499 A A 2541 A C 2617 A A 2741
A C 2742 A A 2757 A
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8 |
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1.19 |
1.19 |
135.5 |
-1.06 |
-0.69 |
12.4 |
85 |
7 |
0 |
0 |
1 |
0 |
0 |
0 |
A 572 A G 573 A C 574 A U 576 A G 577 A A 578 A G
579 A C 790 A U 1255 A G 1256 A G 1259 A C 1261 A
A 2015 A U 2016 A U 2017 A G 2018 A A 2020 A A
2030 A A 2031 A G 2032 A A 2033 A U 2034 A G 2035
A A 2054 A C 2055 A A 2057 A A 2058 A A 2059 A G
2061 A A 2062 A C 2063 A G 2252 A G 2253 A A 2451
A C 2498 A C 2499 A U 2506 A U 2585 A C 2586 A C
2601 A A 2602 A G 2603 A U 2609 A C 2610 A U 2611
A MG 5214 A MG 5366 A
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9 |
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1.34 |
1.34 |
150.4 |
-0.48 |
-0.79 |
4.3 |
89 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
A 572 A G 573 A C 574 A A 821 A U 822 A G 836 A C
837 A U 922 A C 923 A C 935 A C 936 A G 947 A G
948 A C 949 A G 950 A C 951 A A 960 A C 961 A U
963 A C 964 A C 965 A G 966 A C 967 A G 968 A U
969 A U 1026 A U 1130 A A 2020 A U 2022 A G 2024
A C 2025 A C 2026 A G 2027 A U 2028 A G 2029 A A
2030 A A 2031 A G 2032 A A 2033 A U 2034 A G 2035
A G 2053 A A 2054 A C 2055 A A 2269 A G 2270 A U
2357 A G 2455 A C 2456 A U 2457 A G 2489 A G 2490
A C 2498 A C 2499 A C 2617 A C 88 B G 89 B i:A
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10 |
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1.20 |
1.20 |
159.9 |
-0.75 |
-0.68 |
7.8 |
77 |
5 |
0 |
0 |
2 |
1 |
1 |
0 |
C 151 A G 152 A C 461 A C 462 A A 572 A G 573 A C
574 A U 576 A G 577 A A 578 A G 579 A A 676 A A
677 A C 678 A C 679 A G 680 A G 681 A G 682 A C
683 A A 751 A U 773 A A 774 A G 775 A G 776 A C
790 A G 794 A C 795 A C 796 A U 1255 A G 1256 A G
1259 A C 1261 A G 1358 A A 1359 A G 1364 A A 1367
A G 1368 A G 1369 A A 2015 A U 2016 A U 2017 A G
2018 A A 2020 A A 2030 A A 2031 A G 2032 A A 2033
A U 2034 A G 2035 A A 2054 A C 2055 A A 2057 A A
2058 A C 2498 A C 2499 A MG 5160 A MG 5214 A MG
5234 A MG 5235 A MG 5366 A
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11 |
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1.54 |
1.54 |
28.9 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 2114 A G 2115 A A 2117 A U 2118 A A 2119 A U
2122 A G 2123 A G 2124 A G 2125 A U 2150 A A 2171
A U 2172 A A 2173 A C 2174 A C 2175 A MG 5387 A
MG 5388 A MG 5407 A MG 5408 A
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12 |
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1.57 |
1.57 |
29.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 2106 A C 2107 A C 2108 A U 2109 A A 2114 A G
2115 A A 2117 A U 2118 A A 2119 A G 2120 A G 2121
A U 2150 A U 2172 A C 2174 A C 2175 A A 2176 A C
2177 A C 2178 A MG 5384 A MG 5387 A MG 5388 A MG
5389 A MG 5408 A
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13 |
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1.53 |
1.53 |
31.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 2114 A G 2115 A A 2117 A U 2118 A A 2119 A C
2129 A U 2130 A U 2132 A A 2134 A A 2135 A G 2149
A U 2150 A G 2151 A G 2152 A G 2160 A C 2161 A G
2162 A U 2172 A C 2174 A C 2175 A
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14 |
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1.43 |
1.43 |
31.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 2112 A A 2114 A G 2115 A A 2117 A U 2118 A A
2119 A G 2120 A G 2121 A U 2122 A U 2150 A A 2169
A A 2170 A A 2171 A U 2172 A A 2173 A C 2174 A C
2175 A MG 5387 A MG 5388 A MG 5408 A
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15 |
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1.30 |
1.30 |
46.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 2114 A G 2115 A A 2117 A U 2118 A A 2119 A C
2129 A U 2130 A G 2133 A A 2134 A A 2135 A G 2149
A U 2150 A G 2151 A G 2152 A G 2153 A G 2154 A G
2155 A G 2156 A G 2160 A C 2161 A G 2162 A U 2172
A C 2174 A MG 5403 A
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16 |
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1.27 |
2.81 |
20.7 |
2.24 |
0.90 |
2.6 |
72 |
1 |
1 |
0 |
9 |
1 |
1 |
0 |
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17 |
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1.27 |
2.81 |
21.5 |
2.02 |
0.85 |
2.8 |
70 |
1 |
1 |
0 |
8 |
1 |
1 |
0 |
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18 |
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1.50 |
1.68 |
21.5 |
0.31 |
-0.07 |
11.8 |
82 |
3 |
1 |
0 |
3 |
0 |
0 |
0 |
U 1340 A U 1341 A U 1390 A A 1395 A C 1398 A
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19 |
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1.46 |
1.68 |
21.8 |
0.20 |
-0.15 |
11.8 |
82 |
3 |
1 |
0 |
3 |
0 |
0 |
0 |
U 1340 A U 1341 A U 1390 A A 1395 A C 1398 A
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20 |
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1.97 |
1.97 |
18.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 1712 A U 1716 A G 1717 A G 1718 A G 1725 A G
1726 A U 1727 A G 1728 A G 1731 A A 1732 A G 1733
A C 1734 A U 1735 A MG 5293 A MG 5294 A MG 5295 A
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21 |
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1.50 |
1.97 |
15.8 |
0.90 |
0.36 |
7.8 |
93 |
2 |
0 |
3 |
4 |
0 |
1 |
0 |
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22 |
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1.45 |
2.89 |
16.4 |
1.22 |
0.46 |
6.6 |
93 |
2 |
1 |
3 |
6 |
0 |
1 |
0 |
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23 |
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1.32 |
2.43 |
16.3 |
1.09 |
0.22 |
6.5 |
82 |
0 |
2 |
0 |
5 |
1 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program