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PDBsum entry 3f1f
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Tunnel analysis for: 3f1f calculated with  MOLE 2.0
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PDB id
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3f1f
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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13 tunnels,
coloured by tunnel radius |
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10 tunnels,
coloured by
tunnel radius
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10 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.54 |
1.54 |
28.9 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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A 2114 A G 2115 A A 2117 A U 2118 A A 2119 A U
2122 A G 2123 A G 2124 A G 2125 A U 2150 A A 2171
A U 2172 A A 2173 A C 2174 A C 2175 A MG 5794 A
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2 |
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1.56 |
1.56 |
29.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 2106 A C 2107 A C 2108 A U 2109 A A 2114 A G
2115 A A 2117 A U 2118 A A 2119 A G 2120 A G 2121
A U 2150 A U 2172 A C 2174 A C 2175 A A 2176 A C
2177 A C 2178 A
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3 |
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1.53 |
1.53 |
31.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 2114 A G 2115 A A 2117 A U 2118 A A 2119 A C
2129 A U 2130 A U 2132 A A 2134 A A 2135 A G 2149
A U 2150 A G 2151 A G 2152 A G 2160 A C 2161 A G
2162 A U 2172 A C 2174 A C 2175 A
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4 |
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1.43 |
1.43 |
31.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 2112 A A 2114 A G 2115 A A 2117 A U 2118 A A
2119 A G 2120 A G 2121 A U 2122 A U 2150 A A 2169
A A 2170 A A 2171 A U 2172 A A 2173 A C 2174 A C
2175 A MG 5794 A
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5 |
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1.30 |
1.30 |
46.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 2114 A G 2115 A A 2117 A U 2118 A A 2119 A C
2129 A U 2130 A G 2133 A A 2134 A A 2135 A G 2149
A U 2150 A G 2151 A G 2152 A G 2153 A G 2154 A G
2155 A G 2156 A G 2160 A C 2161 A G 2162 A U 2172
A C 2174 A
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6 |
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1.97 |
1.97 |
18.0 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 1712 A U 1716 A G 1717 A G 1718 A G 1725 A G
1726 A U 1727 A G 1728 A G 1731 A A 1732 A G 1733
A C 1734 A U 1735 A MG 5672 A MG 5676 A
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7 |
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1.29 |
1.67 |
15.5 |
2.36 |
0.75 |
8.5 |
96 |
1 |
1 |
0 |
7 |
0 |
0 |
0 |
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8 |
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1.49 |
1.98 |
15.7 |
0.80 |
0.40 |
8.6 |
93 |
2 |
0 |
3 |
4 |
0 |
1 |
0 |
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9 |
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1.45 |
2.89 |
16.4 |
1.11 |
0.45 |
7.2 |
93 |
2 |
1 |
3 |
6 |
0 |
1 |
0 |
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10 |
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1.32 |
2.41 |
16.4 |
1.07 |
0.23 |
8.0 |
82 |
0 |
2 |
0 |
5 |
1 |
1 |
0 |
MG 5012 E
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program