PDBsum entry 3f1e Go to PDB code:  Tunnel analysis for: 3f1e calculated with MOLE 2.0 PDB id 3f1e Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.46 151.4 -0.63 -0.61 8.0 71 5 2 1 4 3 2 0  C 924 A G 925 A G 926 A G 928 A G 929 A C 931 A G 951 A U 952 A G 953 A G 954 A U 955 A U 956 A U 961 A C 962 A G 963 A A 964 A A 965 A G 966 A A 968 A G 971 A C 972 A G 973 A A 974 A A 975 A U 1194 A C 1195 A U 1196 A G 1198 A C 1223 A G 1224 A A 1225 A G 1365 A C 1366 A G 1379 A U 1381 A C 1382 A C 1383 A C 1384 A G 1385 A G 1386 A C 1399 A C 1400 A MG 5350 A MG 5360 A MG 5430 A 2 1.31 2.39 250.4 -0.69 -0.66 8.4 73 9 4 1 5 3 3 0  C 23 A U 24 A C 25 A A 26 A G 27 A G 28 A G 29 A U 30 A C 34 A G 35 A C 36 A G 38 A C 398 A G 399 A C 400 A C 549 A G 550 A U 551 A A 553 A C 554 A C 555 A G 557 A G 558 A A 572 A A 573 A A 574 A U 884 A G 885 A G 886 A G 887 A G 888 A A 889 A G 890 A A 907 A A 908 A A 909 A U 911 A A 915 A G 916 A G 951 A U 952 A G 953 A G 954 A U 955 A U 956 A U 961 A C 962 A G 963 A A 964 A A 965 A G 971 A C 972 A G 973 A A 974 A A 975 A C 1223 A G 1224 A A 1225 A G 1365 A C 1366 A C 1403 A C 1404 A C 1490 A G 1491 A A 1493 A G 1494 A U 1495 A C 1496 A G 1497 A U 1498 A U 1510 A MG 5079 A MG 5080 A MG 5191 A MG 5230 A MG 5234 A MG 5334 A MG 5335 A MG 5336 A MG 5337 A MG 5338 A MG 5339 A MG 5347 A MG 5471 A MG 5473 A MG 5474 A MG 5475 A MG 5476 A U 17 V G 18 V U 19 V A 20 V MG 5060 X U 27 Y C 28 Y G 29 Y U 36 Y A 37 Y MG 5515 Y 3 1.24 1.30 269.3 -0.69 -0.64 8.5 72 9 5 1 6 4 4 0  C 237 A G 238 A U 239 A C 240 A C 241 A C 242 A A 243 A G 281 A G 301 A G 302 A A 572 A A 573 A A 574 A G 575 A G 576 A G 577 A G 595 A C 596 A G 597 A A 632 A G 633 A C 634 A G 635 A U 636 A G 637 A A 759 A G 760 A A 814 A A 815 A C 882 A G 886 A G 887 A G 890 A U 905 A G 906 A A 915 A G 916 A G 951 A U 952 A G 953 A G 954 A U 955 A U 956 A U 961 A C 962 A G 963 A A 964 A A 965 A G 971 A C 972 A G 973 A A 974 A A 975 A C 1223 A G 1224 A A 1225 A G 1365 A C 1366 A C 1403 A C 1404 A C 1490 A G 1491 A A 1493 A G 1494 A U 1495 A C 1496 A G 1497 A U 1498 A U 1510 A G 1511 A MG 5234 A MG 5236 A MG 5263 A MG 5471 A MG 5473 A MG 5474 A MG 5475 A MG 5476 A U 17 V G 18 V U 19 V A 20 V MG 5060 X U 27 Y C 28 Y G 29 Y U 36 Y A 37 Y MG 5515 Y 4 1.28 2.49 21.2 2.86 0.95 0.6 80 0 0 0 10 2 0 0   5 1.44 1.58 26.3 1.39 0.46 8.8 81 0 3 0 9 2 0 0   6 1.35 2.76 28.6 2.13 0.65 3.2 77 0 1 0 9 2 0 0   7 1.22 2.16 15.8 0.34 0.12 16.6 94 1 2 1 5 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.