spacer
spacer

PDBsum entry 3exf

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3exf calculated with MOLE 2.0 PDB id
3exf
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.20 25.9 -1.61 -0.60 20.0 73 3 2 1 0 0 1 1  
2 3.51 3.99 27.8 -1.61 -0.32 22.4 81 6 2 1 2 1 1 0  
3 2.68 3.71 33.5 -1.31 -0.23 23.0 76 5 4 0 3 2 1 0  
4 2.75 2.75 41.1 -2.40 -0.68 27.9 80 7 4 2 2 0 0 0  
5 1.19 1.42 49.8 -0.46 0.04 17.0 82 3 5 4 7 5 0 0  TPP 1003 A
6 1.44 1.61 84.6 -0.42 0.00 16.9 80 8 7 1 9 6 0 0  TPP 1006 C
7 1.22 1.49 42.4 -0.02 0.11 13.4 82 2 5 2 6 5 0 0  TPP 1012 G

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer