PDBsum entry 3ejd

Pore analysis for: 3ejd calculated with

MOLE 2.0

PDB id

3ejd

Pores calculated on whole structure

Pores calculated excluding ligands

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15 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.56

1.65

27.0

1.54

0.44

2.3

86

0

1

1

6

2

1

0

HTG 100 G

2

1.18

2.24

28.0

-0.26

-0.18

7.8

76

1

3

2

4

1

1

0

ZMQ 99 C

3

1.34

1.84

28.2

1.79

0.51

2.2

87

0

1

1

7

2

1

0

HTG 100 C

4

2.51

2.59

42.6

-0.82

-0.55

11.4

85

1

5

6

3

0

3

1

5

2.46

2.98

78.9

-1.42

-0.37

15.8

87

7

4

11

5

2

5

0

6

3.12

3.82

95.5

-1.46

-0.37

17.4

86

7

5

14

6

4

5

1

7

1.16

1.45

102.8

-1.62

-0.43

15.5

78

8

4

8

6

4

1

0

8

1.24

1.31

112.6

-1.71

-0.49

20.9

86

8

8

13

7

2

2

0

ZMQ 99 A HTG 100 A

9

1.22

1.41

116.4

-1.59

-0.42

17.6

75

8

6

5

5

2

2

0

10

1.24

1.52

138.2

-1.41

-0.40

15.3

82

12

6

11

9

3

5

0

11

1.24

1.38

151.2

-1.37

-0.38

16.6

82

12

8

13

10

4

4

1

12

1.30

1.54

159.9

-1.64

-0.44

22.6

86

13

9

12

10

3

3

0

ZMQ 99 A HTG 100 A

13

1.18

1.55

211.1

-1.18

-0.29

17.8

82

16

7

14

17

7

3

1

ZMQ 99 E HTG 100 E HEM 405 F

14

1.19

1.34

246.3

-1.05

-0.33

16.7

82

18

10

12

23

6

2

1

ZMQ 99 A HTG 100 A ZMQ 99 G HEM 405 H

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.