spacer
spacer

PDBsum entry 3eam

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3eam calculated with MOLE 2.0 PDB id
3eam
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
11 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.31 3.72 43.3 -0.04 0.33 7.3 80 1 1 3 7 4 2 0  PC1 603 E
2 1.26 3.39 44.2 0.10 0.36 7.3 81 1 1 3 9 4 2 0  PC1 602 A
3 1.42 2.17 55.6 -1.46 -0.44 23.4 83 3 9 1 7 2 1 0  
4 1.25 1.24 65.3 -0.89 -0.07 14.5 77 3 5 1 5 5 2 0  LMT 501 E LMT 602 E
5 1.22 1.21 69.2 -1.34 -0.37 17.1 75 3 5 2 4 4 2 0  LMT 501 E LMT 602 E
6 1.42 3.72 78.5 0.34 0.01 9.7 95 2 6 6 22 2 1 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
7 1.32 1.68 79.9 0.02 -0.18 10.4 96 2 6 7 18 1 1 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
8 1.29 1.63 80.0 0.20 -0.10 10.4 96 2 6 7 18 1 1 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
9 1.29 3.47 81.4 0.36 0.01 9.5 96 2 6 6 22 2 1 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
10 1.37 3.77 81.6 0.25 0.30 6.4 85 4 2 3 17 5 2 0  LMT 501 A PC1 602 A LMT 501 B LMT 501 C LMT 502 C
LMT 501 E LMT 602 E
11 1.30 2.84 89.7 -0.72 0.11 15.0 84 6 5 4 13 5 2 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E PC1 603 E
12 1.20 1.21 90.5 0.01 0.08 8.8 85 4 4 3 13 5 2 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
13 1.23 1.23 93.2 0.10 0.06 8.0 85 4 4 3 14 5 2 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
14 1.22 1.24 93.9 0.20 -0.07 10.9 94 2 8 7 17 3 1 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
15 1.25 1.27 97.8 -1.70 -0.47 20.3 81 5 7 5 5 4 2 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
16 1.48 1.87 100.4 -0.25 -0.19 14.2 95 5 8 8 18 1 1 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
17 1.32 3.43 102.2 -0.61 0.04 14.0 86 6 4 4 15 5 2 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E PC1 603 E
18 1.20 1.80 102.1 -1.03 -0.33 14.6 79 3 7 3 5 6 2 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
19 1.33 1.69 106.8 -0.42 -0.05 12.5 86 7 4 5 14 4 2 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E PC1 603 E
20 1.22 1.84 122.1 -0.49 -0.07 14.1 86 6 8 5 13 6 2 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E PC1 603 E
21 1.30 1.33 186.8 -0.81 -0.36 18.3 94 6 19 9 21 1 1 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
22 1.39 1.39 196.5 -1.37 -0.36 20.9 89 10 15 7 15 3 1 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E PC1 603 E
23 1.28 1.29 193.1 -1.12 -0.31 19.3 88 8 15 6 19 3 2 0  LMT 501 A PC1 602 A LMT 501 B LMT 501 C LMT 502 C
LMT 501 E LMT 602 E
24 1.34 2.19 197.0 -0.77 -0.31 18.4 93 8 18 10 24 2 1 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E
25 1.33 1.49 204.1 -1.90 -0.48 26.3 82 12 17 7 11 7 2 0  LMT 501 A LMT 501 B LMT 501 C LMT 502 C LMT 501 E
LMT 602 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer