PDBsum entry 3e8e Go to PDB code:  Tunnel analysis for: 3e8e calculated with MOLE 2.0 PDB id 3e8e Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.66 3.31 23.9 -0.89 -0.19 17.7 83 2 3 2 5 1 0 0  G98 351 E 2 1.30 1.54 24.5 1.06 0.23 7.4 78 3 1 1 7 1 0 0  G98 351 E 3 1.28 1.52 24.8 0.96 0.15 7.4 76 3 1 0 7 1 0 0  G98 351 E 4 1.65 1.87 20.8 0.48 0.46 14.2 65 1 2 1 4 5 0 0   5 1.60 3.07 26.8 -0.20 0.23 15.8 68 2 2 2 4 5 0 0   6 1.76 2.59 29.4 -0.21 0.25 13.0 72 1 2 3 5 5 0 0   7 1.27 1.44 15.7 -0.30 -0.10 12.9 75 2 2 1 0 2 1 0   8 1.27 1.44 15.7 -0.30 -0.10 12.9 75 2 2 1 0 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.