PDBsum entry 3e8d Go to PDB code:  Pore analysis for: 3e8d calculated with MOLE 2.0 PDB id 3e8d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.23 3.68 31.4 -2.68 -0.60 38.6 79 6 4 0 3 0 0 0   2 1.62 1.75 41.5 -1.29 -0.55 19.3 88 5 6 3 5 1 0 0  G98 1 B 3 1.35 1.44 57.9 -0.69 -0.34 17.4 85 6 7 4 6 3 0 0  G98 1 A 4 1.32 1.45 73.4 -0.94 -0.37 19.3 85 8 8 5 6 3 0 0  G98 1 A 5 1.18 1.18 32.5 -1.33 -0.60 14.6 71 1 3 1 0 2 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.