PDBsum entry 3e5c Go to PDB code:  Tunnel analysis for: 3e5c calculated with MOLE 2.0 PDB id 3e5c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 tunnels, coloured by tunnel radius 20 tunnels, coloured by tunnel radius 20 tunnels, coloured as in list below Tunnels Length Hydropathy Hydrophobicity Polarity Mutability Residue..type Ligands Radius 1 1.88 9.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 G A,30 U A,37 U A,38 A A,48 G A,216 SAM A 2 1.84 11.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  30 U A,31 G A,37 U A,38 A A,48 G A,216 SAM A 3 1.56 11.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  31 G A,33 C A,34 U A,35 U A,36 G A,47 G A,208 SR A 4 1.49 12.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  15 G A,28 G A,31 G A,32 C A,33 C A 5 1.85 12.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  31 G A,34 U A,35 U A,36 G A,37 U A,38 A A,47 G A, 48 G A,216 SAM A 6 1.89 13.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  37 U A,38 A A,39 A A,42 G A,46 G A,47 G A,48 G A, 204 SR A,215 SR A,216 SAM A 7 1.33 13.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  31 G A,33 C A,34 U A,35 U A,36 G A,47 G A,208 SR A 8 1.49 13.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  15 G A,28 G A,31 G A,32 C A,33 C A,34 U A,35 U A 9 1.88 15.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 G A,30 U A,31 G A,34 U A,35 U A,36 G A,37 U A, 38 A A,47 G A,48 G A,216 SAM A 10 1.85 16.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 G A,37 U A,38 A A,39 A A,42 G A,46 G A,47 G A, 48 G A,204 SR A,215 SR A,216 SAM A 11 1.76 17.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  9 A A,10 A A,11 G A,26 C A,27 A A,28 G A,31 G A, 33 C A,34 U A,35 U A,201 SR A,203 SR A,214 SR A 12 1.48 17.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  9 A A,10 A A,11 G A,26 C A,27 A A,28 G A,31 G A, 32 C A,33 C A,201 SR A,203 SR A,214 SR A 13 1.73 21.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 G A,8 A A,9 A A,10 A A,11 G A,27 A A,28 G A,31 G A,33 C A,34 U A,35 U A,201 SR A,203 SR A,214 SR A 14 1.48 21.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 G A,8 A A,9 A A,10 A A,11 G A,27 A A,28 G A,31 G A,32 C A,33 C A,201 SR A,203 SR A,214 SR A 15 1.72 22.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  10 A A,11 G A,24 G A,25 C A,26 C A,27 A A,28 G A, 31 G A,33 C A,34 U A,35 U A,201 SR A,203 SR A,214 SR A 16 1.48 22.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  10 A A,11 G A,24 G A,25 C A,26 C A,27 A A,28 G A, 31 G A,32 C A,33 C A,201 SR A,203 SR A,214 SR A 17 1.73 24.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  10 A A,11 G A,12 G A,13 A A,14 U A,23 C A,25 C A, 26 C A,28 G A,31 G A,33 C A,34 U A,35 U A,203 SR A,213 SR A,214 SR A 18 1.48 24.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  10 A A,11 G A,12 G A,13 A A,14 U A,23 C A,25 C A, 26 C A,28 G A,31 G A,32 C A,33 C A,203 SR A,213 SR A,214 SR A 19 1.74 31.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  5 C A,6 C A,7 G A,8 A A,9 A A,10 A A,11 G A,27 A A,28 G A,31 G A,33 C A,34 U A,35 U A,201 SR A,203 SR A,214 SR A 20 1.48 31.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  5 C A,6 C A,7 G A,8 A A,9 A A,10 A A,11 G A,27 A A,28 G A,31 G A,32 C A,33 C A,201 SR A,203 SR A, 214 SR A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.