spacer
spacer

PDBsum entry 3e43

Go to PDB code: 
Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 3e43 calculated with MOLE 2.0 PDB id
3e43
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.80 1.90 49.8 -1.72 -0.56 18.9 81 6 4 5 2 2 0 0  DG 5 E DT 6 E DC 11 F DG 12 F DG 13 F DC 14 F
2 3.62 3.84 58.5 -1.52 -0.72 10.5 91 2 4 10 4 0 2 0  DG 1 E DA 8 E DC 10 E DC 11 E DG 12 E DC 10 F DC
11 F DG 12 F
3 1.19 1.46 89.2 -1.36 -0.65 10.4 77 5 4 7 2 3 2 0  DG 5 E DT 6 E DA 8 E DC 10 E DC 11 E DG 12 E DG
13 E DC 14 E DG 4 F DG 5 F DT 6 F DC 10 F DC 11 F
DG 12 F DG 13 F DC 14 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer