PDBsum entry 3e2d

Tunnel analysis for: 3e2d calculated with

MOLE 2.0

PDB id

3e2d

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.47

1.76

26.9

-0.26

0.08

4.1

73

1

1

3

3

5

1

0

EDO 621 A

2

1.47

1.76

29.5

-0.27

0.02

5.3

73

1

2

3

2

6

2

0

EDO 621 A

3

1.26

1.40

18.6

-2.10

-0.51

19.4

80

3

2

2

1

1

0

0

4

1.53

2.61

17.5

-1.11

-0.19

20.1

75

3

1

2

2

2

0

0

5

1.33

1.39

17.7

-1.06

-0.12

19.1

74

4

1

2

2

2

0

0

6

1.57

2.11

16.0

-1.24

-0.24

17.5

77

4

1

3

2

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.