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PDBsum entry 3dyd

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protein ligands Protein-protein interface(s) links
Transferase PDB id
3dyd

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
388 a.a. *
Ligands
PLP ×2
Waters ×206
* Residue conservation analysis
PDB id:
3dyd
Name: Transferase
Title: Human tyrosine aminotransferase
Structure: Tyrosine aminotransferase. Chain: a, b. Synonym: l-tyrosine:2-oxoglutarate aminotransferase, tat. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: tat. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
2.30Å     R-factor:   0.222     R-free:   0.261
Authors: T.Karlberg,M.Moche,J.Andersson,C.H.Arrowsmith,H.Berglund,R.Collins, L.G.Dahlgren,A.M.Edwards,S.Flodin,A.Flores,S.Graslund,M.Hammarstrom, A.Johansson,I.Johansson,T.Kotenyova,L.Lehtio,M.E.Nilsson,P.Nordlund, T.Nyman,K.Olesen,C.Persson,J.Sagemark,A.G.Thorsell,L.Tresaugues, S.Van Den Berg,J.Weigelt,M.Welin,M.Wikstrom,M.Wisniewska,H.Schuler, Structural Genomics Consortium (Sgc)
Key ref: T.Karlberg et al. Human tyrosine aminotransferase. To be published, .
Date:
27-Jul-08     Release date:   19-Aug-08    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P17735  (ATTY_HUMAN) -  Tyrosine aminotransferase from Homo sapiens
Seq:
Struc:
454 a.a.
388 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.6.1.5  - tyrosine transaminase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Phenylalanine and Tyrosine Biosynthesis
      Reaction: L-tyrosine + 2-oxoglutarate = 3-(4-hydroxyphenyl)pyruvate + L-glutamate
L-tyrosine
+ 2-oxoglutarate
= 3-(4-hydroxyphenyl)pyruvate
+ L-glutamate
      Cofactor: Pyridoxal 5'-phosphate
Pyridoxal 5'-phosphate
Bound ligand (Het Group name = PLP) matches with 93.75% similarity
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

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