PDBsum entry 3duq Go to PDB code:  Pore analysis for: 3duq calculated with MOLE 2.0 PDB id 3duq Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 pore, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.10 1.53 29.3 -1.26 -0.72 6.5 95 1 1 5 4 0 0 0   2 1.20 4.39 44.7 -0.97 -0.27 19.0 79 5 3 1 8 3 0 0  U10 504 M CDL 800 M 3 2.83 3.56 62.1 2.20 1.02 5.3 73 2 1 1 7 6 0 0   4 1.18 1.42 65.6 0.47 0.70 9.0 78 4 1 5 9 9 0 0  BCL 502 L U10 504 L BCL 501 M BCL 502 M 5 1.17 1.42 66.1 0.98 0.82 6.7 76 4 1 4 12 9 0 1  BCL 501 L BCL 502 L U10 504 L BCL 501 M BCL 502 M 6 1.20 4.02 80.8 0.02 0.29 11.8 75 6 3 2 16 7 1 0  LDA 703 H BCL 501 L BCL 502 L BPH 503 L LDA 704 L U10 504 M LDA 701 M CDL 800 M 7 1.19 1.41 89.3 0.95 0.58 5.3 74 1 4 4 16 11 1 0  U10 504 L BCL 501 M BCL 502 M BPH 503 M SPN 600 M 8 1.18 2.67 100.7 0.60 0.48 9.8 72 6 3 1 16 9 3 0  U10 504 L BCL 501 M BCL 502 M BPH 503 M SPN 600 M 9 1.24 1.40 107.6 0.80 0.56 7.4 74 5 3 3 18 11 2 0  U10 504 L BCL 501 M BCL 502 M BPH 503 M SPN 600 M 10 1.72 1.86 115.8 0.81 0.65 7.7 73 6 3 3 25 13 2 1  BCL 501 L BCL 502 L BPH 503 L U10 504 L LDA 704 L BCL 501 M BCL 502 M BPH 503 M SPN 600 M LDA 701 M 11 1.27 1.67 242.2 0.21 0.29 12.5 79 10 5 3 24 9 4 1  BCL 501 L BCL 502 L U10 504 L BCL 501 M BCL 502 M BPH 503 M SPN 600 M Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.